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A

AbstractJob - Class in edu.isi.pegasus.planner.dax
 
AbstractJob() - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob
 
AbstractJob(AbstractJob) - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob
Copy constructor
ADAG - Class in edu.isi.pegasus.planner.dax
This class provides the Java API to create DAX files. The DAX XML SCHEMA is available at http://pegasus.isi.edu/schema/dax-3.3.xsd and documentation available at http://pegasus.isi.edu/wms/docs/schemas/dax-3.3/dax-3.3.html The DAX consists of 6 parts the first 4 are optional and the last is optional.
ADAG(String) - Constructor for class edu.isi.pegasus.planner.dax.ADAG
The Simple constructor for the DAX object
ADAG(String, int, int) - Constructor for class edu.isi.pegasus.planner.dax.ADAG
DAX Constructor
addAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add AbstractJob to the DAX
addAbstractJobs(List<AbstractJob>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add AbstractJobs to the DAX
addArgument(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a string argument to the argument List.
addArgument(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a file object to the argument List.
addArgument(File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a Array of File objects to the argument list.
addArgument(List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a List of File objects to the argument list.
addArgument(File[], String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a Array of File objects to the argument list.
addArgument(List<File>, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a List of File objects to the argument list.
addArgument(String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and value to the argument List.
addArgument(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and value to the argument List.
The argkey and argvalue are seperated by argdelimiter.
Example addArgument("-p","0","=") will result in the argument being added as -p=0
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and File value to the argument List.
The argkey and argvalue are seperated by space.
Example addArgument("-i",new File("f.a")) will result in the argument being added as -i <file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and File value to the argument List.
The argkey and argvalue are separated by the argdelimiter.
Example addArgument("-i",new File("f.a"),"=") will result in the argument being added as -i=<file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files)

will result in the argument being added as -i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
List files = new LinkedList();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files)

will result in the argument being added as -i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, File[], String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimiter
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files,"=",",")

will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addArgument(String, List<File>, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimter
Example:
List files = new LinkedList();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files,"=",",")

will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space.
addDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a DAG job to the DAX
addDAGs(List<DAG>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add multiple DAG jobs to the DAX
addDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a DAX job to the DAX
addDAXs(List<DAX>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add multiple DAX jobs to the DAX
addDependency(String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a parent child dependency between two jobs,dax,dag
addDependency(AbstractJob, AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a parent child dependency between two jobs,dax,dag
addDependency(String, String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a parent child dependency with a dependency label
addDependency(AbstractJob, AbstractJob, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a parent child dependency with a dependency label
addExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add Executable to the DAX
addExecutables(List<Executable>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add Multiple Executable objects to the DAX
addFile(File) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a RC File object to the top of the DAX.
addFiles(List<File>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add Files to the RC Section on top of the DAX
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add Notification to the job
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add notification to the job
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a Notification for this Workflow
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a Notification for this Workflow
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable
Add a Notification for this Executable same as addNotification
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable
Add a Notification for this Executable Same as add Notification
addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Transformation
Add a Notification for this Transformation
addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Transformation
Add a Notification for this Transformation
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add Notifications to the job
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a List of Notifications for this Workflow
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable
Add a List of Notifications for this Executable Same as addNotifications
addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Transformation
Add a List of Notifications for this Transformation
addJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add Job to the DAX
addJobs(List<Job>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add multiple Jobs to the DAX
addMetaData(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a Metadata entry for the Catalog object
addMetaData(MetaData) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a MetaData object for the Catalog object
addMetaData(List<MetaData>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a List of MetaData objects to the Catalog entry object
addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add Notification to the job
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add notification to the job
addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a Notification for this Workflow
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a Notification for this Workflow
addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable
Add a Notification for this Executable same as addInvoke
addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable
Add a Notification for this Executable Same as addInvoke
addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Transformation
Add a Notification for this Transformation same as addInvoke()
addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add Notifications to the job
addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add a List of Notifications for this Workflow
addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable
Add a List of Notifications for this Executable.
addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Transformation
Add a List of Notifications for this Transformation.
addPhysicalFile(String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a pfn url to the Catalog
addPhysicalFile(String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a PFN url and a site id to the Catalog
addPhysicalFile(PFN) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a PFN object to the Catalog
addPhysicalFiles(List<PFN>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a list of PFN objects to the Catalog
addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a profile to the job
addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a profile to the job
addProfile(Profile) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a Profile object
addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a profile to the catalog entry
addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a profile to the catalog entry
addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
 
addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
 
addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Add a list of Profile objects
addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a List of profile objects to this Catalog entry
addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Add a Profile object to this Catalog entry
addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.PFN
 
addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.PFN
 
addTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add Transformation to the DAX
addTransformations(List<Transformation>) - Method in class edu.isi.pegasus.planner.dax.ADAG
Add Multiple Transformation to the DAX
ARG_DELIMITER - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
 

C

CatalogType - Class in edu.isi.pegasus.planner.dax
Abstract Type for RC and TC Sections of the DAX.
CatalogType() - Constructor for class edu.isi.pegasus.planner.dax.CatalogType
 
CatalogType(CatalogType) - Constructor for class edu.isi.pegasus.planner.dax.CatalogType
Copy Constructor
checkID(String) - Static method in class edu.isi.pegasus.planner.dax.AbstractJob
Copy Constructor
clone() - Method in class edu.isi.pegasus.planner.dax.Edge
 
clone() - Method in class edu.isi.pegasus.planner.dax.File
Return a clone of this File
clone() - Method in class edu.isi.pegasus.planner.dax.Invoke
Create a copy of this Invoke object
clone() - Method in class edu.isi.pegasus.planner.dax.MetaData
Create a copy of this Metdata Object
clone() - Method in class edu.isi.pegasus.planner.dax.Profile
Create a copy of this Profile
containsAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if an abstractjob exists in the DAX
containsAbstractJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if a jobid exists in the DAX
containsDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if a DAG job exists in the DAX
containsDAGId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if a DAG job id exists in the DAX
containsDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if a DAX job exists in the DAX
containsDAXId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if a DAX job id exists in the DAX
containsExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG
Checks if a given executable exists in the DAX based Transformation Catalog
containsJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if a job exists in the DAX
containsJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Check if a jobid exists in the DAX
containsTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG
Checks if a given Transformation exists in the DAX based Transformation Catalog

D

DAG - Class in edu.isi.pegasus.planner.dax
DAG Class to hold the DAG job object.
DAG(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG
Create a DAG object
DAG(DAG) - Constructor for class edu.isi.pegasus.planner.dax.DAG
Copy Constructor
DAG(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG
Create a DAG object
DAX - Class in edu.isi.pegasus.planner.dax
Creates a DAX job object
DAX(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX
Create a DAX job object
DAX(DAX) - Constructor for class edu.isi.pegasus.planner.dax.DAX
Copy Constructor
DAX(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX
Create a DAX job object
Diamond() - Static method in class edu.isi.pegasus.planner.dax.ADAG
 
Diamond - Class in edu.isi.pegasus.planner.dax.examples
An example class to highlight how to use the JAVA DAX API to generate a diamond DAX.
Diamond() - Constructor for class edu.isi.pegasus.planner.dax.examples.Diamond
 

E

Edge - Class in edu.isi.pegasus.planner.dax
 
Edge(String, String) - Constructor for class edu.isi.pegasus.planner.dax.Edge
 
Edge(Edge) - Constructor for class edu.isi.pegasus.planner.dax.Edge
 
Edge(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Edge
 
edu.isi.pegasus.planner.dax - package edu.isi.pegasus.planner.dax
 
edu.isi.pegasus.planner.dax.examples - package edu.isi.pegasus.planner.dax.examples
 
equals(Object) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
equals(Object) - Method in class edu.isi.pegasus.planner.dax.Edge
 
equals(Object) - Method in class edu.isi.pegasus.planner.dax.Executable
 
equals(Object) - Method in class edu.isi.pegasus.planner.dax.File
Check if this File is equal to Object o
equals(Object) - Method in class edu.isi.pegasus.planner.dax.Transformation
 
Executable - Class in edu.isi.pegasus.planner.dax
The Transformation Catalog object the represent the entries in the DAX transformation section.
Executable(String) - Constructor for class edu.isi.pegasus.planner.dax.Executable
Create a new executable
Executable(Executable) - Constructor for class edu.isi.pegasus.planner.dax.Executable
Copy Constructor
Executable(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Executable
Create a new Executable
Executable.ARCH - Enum in edu.isi.pegasus.planner.dax
ARCH Types
Executable.ARCH() - Constructor for enum edu.isi.pegasus.planner.dax.Executable.ARCH
 
Executable.OS - Enum in edu.isi.pegasus.planner.dax
OS Types
Executable.OS() - Constructor for enum edu.isi.pegasus.planner.dax.Executable.OS
 

F

File - Class in edu.isi.pegasus.planner.dax
This class is the container for any File object, either the RC section, or uses
File(File) - Constructor for class edu.isi.pegasus.planner.dax.File
Copy constructor
File(File, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File
Copy constructor, but change the linkage of the file.
File(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.File
Create new File object
File(String) - Constructor for class edu.isi.pegasus.planner.dax.File
Create new file object
File(String, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File
Create new file object
File(String, String, String, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File
Create a new file object
File.LINK - Enum in edu.isi.pegasus.planner.dax
The linkages that a file can be of
File.LINK() - Constructor for enum edu.isi.pegasus.planner.dax.File.LINK
 
File.TRANSFER - Enum in edu.isi.pegasus.planner.dax
Three Transfer modes supported, Transfer this file, don't transfer or stageout as well as optional.
File.TRANSFER() - Constructor for enum edu.isi.pegasus.planner.dax.File.TRANSFER
 
FILE_DELIMITER - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
 

G

generate(String, String) - Method in class edu.isi.pegasus.planner.dax.examples.Diamond
 
getAbstractJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns an abstract Job with id ajobid if present otherwise null.
getArchitecture() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the architecture the Executable is compiled for
getArguments() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Return the argument List.
getChild() - Method in class edu.isi.pegasus.planner.dax.Edge
 
getCount() - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns the total count of the dax collection.
getDAG(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a DAG object with id dagid if present otherwise null.
getDAGs() - Method in class edu.isi.pegasus.planner.dax.ADAG
Get a list of all the DAG jobs.
getDAX(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a DAX object with id daxid if present otherwise null.
getDAXs() - Method in class edu.isi.pegasus.planner.dax.ADAG
Get a list of all the DAX jobs.
getEdges(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a list of Edge objects for a child job/dax/dag id.
getEdges() - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a Set of all the Edge objects for the DAX.
getExecutable() - Method in class edu.isi.pegasus.planner.dax.File
Check if the file is an executable
getExecutables() - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a set of Executable Objects stored as part of the inDAX Transformation Catalog;
getFiles() - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a list of File objects defined as the inDax Replica Catalog
getGlibc() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the Glibc version if any set for this file.
getId() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
getIndex() - Method in class edu.isi.pegasus.planner.dax.ADAG
 
getInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
Check if the executable is of type installed.
getInvoke() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Returns list of Invoke objects
getInvoke() - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a list of Invoke objects associated with the workflow
getInvoke() - Method in class edu.isi.pegasus.planner.dax.Executable
Return the list of Notification objects
getInvoke() - Method in class edu.isi.pegasus.planner.dax.Transformation
Return the list of Notification objects
getJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a Job object with id jobid if present otherwise null.
getJobs() - Method in class edu.isi.pegasus.planner.dax.ADAG
Get a list of all the DAG jobs.
getKey() - Method in class edu.isi.pegasus.planner.dax.MetaData
Get the key of this metadata object
getKey() - Method in class edu.isi.pegasus.planner.dax.Profile
Get the key of this Profile
getLabel() - Method in class edu.isi.pegasus.planner.dax.Edge
 
getLink() - Method in class edu.isi.pegasus.planner.dax.File
Get the linkage of the file.
getMetaData() - Method in class edu.isi.pegasus.planner.dax.CatalogType
Returns the List of MetaData objects associated with this Catalog entry object
getName() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
getName() - Method in class edu.isi.pegasus.planner.dax.ADAG
Return the name/label of the dax
getName() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the name of the executable
getName() - Method in class edu.isi.pegasus.planner.dax.File
Get the name of the file
getName() - Method in class edu.isi.pegasus.planner.dax.Transformation
Get the name of the transformation
getNamespace() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the namespace of the executable
getNamespace() - Method in class edu.isi.pegasus.planner.dax.File
Get the namespace of the file
getNamespace() - Method in class edu.isi.pegasus.planner.dax.Job
 
getNameSpace() - Method in class edu.isi.pegasus.planner.dax.Profile
Get the namespace of this profile
getNamespace() - Method in class edu.isi.pegasus.planner.dax.Transformation
Get the namespace of the transformation
getNodeLabel() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
getNotification() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Same as getInvoke().
getNotification() - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a list of Invoke objects associated with the workflow.
getNotification() - Method in class edu.isi.pegasus.planner.dax.Executable
Return the list of Notification objects (same as getInvoke)
getNotification() - Method in class edu.isi.pegasus.planner.dax.Transformation
Return the list of Notification objects (same as getInvoke()
getOptional() - Method in class edu.isi.pegasus.planner.dax.File
Check the optional flag of the file
getOS() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the OS the Executable is compiled for
getOsRelease() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the OS release set for this executable.
getOsVersion() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the OS version set for this executable.
getParent() - Method in class edu.isi.pegasus.planner.dax.Edge
 
getPhysicalFiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType
Returns a List of PFN objects associated with this Catalog entry
getProfiles() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Return the profile List.
getProfiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType
Return the List of Profile objects associated with this Catalog entry
getProfiles() - Method in class edu.isi.pegasus.planner.dax.PFN
 
getRegister() - Method in class edu.isi.pegasus.planner.dax.File
Get the register flag of this file.
getSite() - Method in class edu.isi.pegasus.planner.dax.PFN
 
getSize() - Method in class edu.isi.pegasus.planner.dax.File
Return the size of the file
getStderr() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
getStdin() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Get the STDIN file object
getStdout() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
getTransfer() - Method in class edu.isi.pegasus.planner.dax.File
Get the transfer type of the file
getTransformations() - Method in class edu.isi.pegasus.planner.dax.ADAG
Returns a set of Transformation Objects (complex executables) stored in the DAX based Transformation Catalog
getType() - Method in class edu.isi.pegasus.planner.dax.MetaData
Get the type of the metdata object
getURL() - Method in class edu.isi.pegasus.planner.dax.PFN
 
getUses() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
getUses() - Method in class edu.isi.pegasus.planner.dax.Transformation
Get the List of files and/or executables being used by the transformation
getValue() - Method in class edu.isi.pegasus.planner.dax.MetaData
Get the value of the metdata object
getValue() - Method in class edu.isi.pegasus.planner.dax.Profile
Get the value of this profile
getVersion() - Method in class edu.isi.pegasus.planner.dax.Executable
Get the version of the executable
getVersion() - Method in class edu.isi.pegasus.planner.dax.File
Get the version of the file
getVersion() - Method in class edu.isi.pegasus.planner.dax.Job
 
getVersion() - Method in class edu.isi.pegasus.planner.dax.Transformation
Get the version of the transformation
getWhat() - Method in class edu.isi.pegasus.planner.dax.Invoke
Get what to invoke
getWhen() - Method in class edu.isi.pegasus.planner.dax.Invoke
Get when to Invoke

H

hashCode() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
hashCode() - Method in class edu.isi.pegasus.planner.dax.Edge
 
hashCode() - Method in class edu.isi.pegasus.planner.dax.Executable
 
hashCode() - Method in class edu.isi.pegasus.planner.dax.File
HashCode of this File
hashCode() - Method in class edu.isi.pegasus.planner.dax.Transformation
 

I

Invoke - Class in edu.isi.pegasus.planner.dax
The Notification invoke object for the Dax API
Invoke(Invoke) - Constructor for class edu.isi.pegasus.planner.dax.Invoke
Copy Constructor
Invoke(Invoke.WHEN) - Constructor for class edu.isi.pegasus.planner.dax.Invoke
Crete a new Invoke object
Invoke(Invoke.WHEN, String) - Constructor for class edu.isi.pegasus.planner.dax.Invoke
Create a new Invoke object
Invoke.WHEN - Enum in edu.isi.pegasus.planner.dax
WHEN To INVOKE
Invoke.WHEN() - Constructor for enum edu.isi.pegasus.planner.dax.Invoke.WHEN
 
isDAG() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Is this Object a DAG
isDAG() - Method in class edu.isi.pegasus.planner.dax.DAG
Is this Object a DAG
isDAX() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Is this Object a DAX
isDAX() - Method in class edu.isi.pegasus.planner.dax.DAX
Is this Object a DAX
isExecutable() - Method in class edu.isi.pegasus.planner.dax.CatalogType
 
isExecutable() - Method in class edu.isi.pegasus.planner.dax.Executable
 
isFile() - Method in class edu.isi.pegasus.planner.dax.CatalogType
 
isFile() - Method in class edu.isi.pegasus.planner.dax.File
 
isJob() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
Is this Object a Job
isJob() - Method in class edu.isi.pegasus.planner.dax.Job
Is this Object a Job
isNodeIdValid(String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
 
isValid(Pattern, String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
 
isVersionValid(String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
 

J

Job - Class in edu.isi.pegasus.planner.dax
 
Job(String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
 
Job(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
 
Job(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
 
Job(Job) - Constructor for class edu.isi.pegasus.planner.dax.Job
 
Job(String, String, String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
 
JOBTYPE - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
 

M

main(String[]) - Static method in class edu.isi.pegasus.planner.dax.ADAG
Create an example DIAMOND DAX
main(String[]) - Static method in class edu.isi.pegasus.planner.dax.examples.Diamond
Create an example DIAMOND DAX
main(String[]) - Static method in class edu.isi.pegasus.planner.dax.examples.Pipeline
 
mArch - Variable in class edu.isi.pegasus.planner.dax.Executable
Architecture the executable is compiled for
mArguments - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mChild - Variable in class edu.isi.pegasus.planner.dax.Edge
The parent of the child
mCount - Variable in class edu.isi.pegasus.planner.dax.ADAG
The Count of the number of dax objects : N
mDependencies - Variable in class edu.isi.pegasus.planner.dax.ADAG
Map of Dependencies between Job,DAX,DAG objects.
MetaData - Class in edu.isi.pegasus.planner.dax
Metadata object for the DAX API
MetaData(MetaData) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
Copy constructor
MetaData(String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
Create a new Metadata object
MetaData(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
Create a new Metadata object
mExecutable - Variable in class edu.isi.pegasus.planner.dax.File
Is the file an executable.
mExecutables - Variable in class edu.isi.pegasus.planner.dax.ADAG
The list of Executable objects
mFiles - Variable in class edu.isi.pegasus.planner.dax.ADAG
The list of edu.isi.pegasus.planner.dax.File objects
mGlibc - Variable in class edu.isi.pegasus.planner.dax.Executable
Glibc the executable is compiled for
mId - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mIndex - Variable in class edu.isi.pegasus.planner.dax.ADAG
The Index of the dax object.
mInstalled - Variable in class edu.isi.pegasus.planner.dax.Executable
Flag to mark if the executable is installed or can be staged.
mInvokes - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mInvokes - Variable in class edu.isi.pegasus.planner.dax.ADAG
List of Notification objects
mInvokes - Variable in class edu.isi.pegasus.planner.dax.Executable
List of Notification objects
mInvokes - Variable in class edu.isi.pegasus.planner.dax.Transformation
 
mJobs - Variable in class edu.isi.pegasus.planner.dax.ADAG
The List of Job,DAX and DAG objects
mKey - Variable in class edu.isi.pegasus.planner.dax.MetaData
Metadata Key
mKey - Variable in class edu.isi.pegasus.planner.dax.Profile
Key of the profile
mLabel - Variable in class edu.isi.pegasus.planner.dax.Edge
The edge label for the parent child relationship.
mLDAGs - Variable in class edu.isi.pegasus.planner.dax.ADAG
 
mLDAXs - Variable in class edu.isi.pegasus.planner.dax.ADAG
 
mLink - Variable in class edu.isi.pegasus.planner.dax.File
 
mLJobs - Variable in class edu.isi.pegasus.planner.dax.ADAG
 
mLogger - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mLogger - Variable in class edu.isi.pegasus.planner.dax.ADAG
 
mLogger - Variable in class edu.isi.pegasus.planner.dax.CatalogType
 
mMetadata - Variable in class edu.isi.pegasus.planner.dax.CatalogType
 
mName - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mName - Variable in class edu.isi.pegasus.planner.dax.ADAG
The Name / Label of the DAX
mName - Variable in class edu.isi.pegasus.planner.dax.Executable
Name of the executable
mName - Variable in class edu.isi.pegasus.planner.dax.File
The logical name of the file.
mName - Variable in class edu.isi.pegasus.planner.dax.Transformation
Name of the transformation
mNamespace - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mNamespace - Variable in class edu.isi.pegasus.planner.dax.Executable
Namespace of the executable
mNamespace - Variable in class edu.isi.pegasus.planner.dax.File
The namespace on a file.
mNamespace - Variable in class edu.isi.pegasus.planner.dax.Profile
Namespace of the profile
mNamespace - Variable in class edu.isi.pegasus.planner.dax.Transformation
Namespace of the Transformation
mNodeIdPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
 
mNodeLabel - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mOptional - Variable in class edu.isi.pegasus.planner.dax.File
Is the file optional
mOs - Variable in class edu.isi.pegasus.planner.dax.Executable
Os the executable is compiled for
mOsRelease - Variable in class edu.isi.pegasus.planner.dax.Executable
Os release the executable is compiled for
mOsVersion - Variable in class edu.isi.pegasus.planner.dax.Executable
OS version the executable is compiled for
mParent - Variable in class edu.isi.pegasus.planner.dax.Edge
The parent of the parent
mPFNs - Variable in class edu.isi.pegasus.planner.dax.CatalogType
 
mProfiles - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mProfiles - Variable in class edu.isi.pegasus.planner.dax.CatalogType
 
mProfiles - Variable in class edu.isi.pegasus.planner.dax.PFN
 
mRegister - Variable in class edu.isi.pegasus.planner.dax.File
Should the file be registered in the replica catalog
mSite - Variable in class edu.isi.pegasus.planner.dax.PFN
 
mSize - Variable in class edu.isi.pegasus.planner.dax.File
File size of the file no units required
mStderr - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mStdin - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mStdout - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mTransfer - Variable in class edu.isi.pegasus.planner.dax.File
Should the file be transferred on generation.
mTransformations - Variable in class edu.isi.pegasus.planner.dax.ADAG
The List of Transformation objects
mType - Variable in class edu.isi.pegasus.planner.dax.MetaData
Metadata type
mURL - Variable in class edu.isi.pegasus.planner.dax.PFN
 
mUses - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mUses - Variable in class edu.isi.pegasus.planner.dax.Transformation
List of executable of files used by the transformation
mValue - Variable in class edu.isi.pegasus.planner.dax.MetaData
Metadata value
mValue - Variable in class edu.isi.pegasus.planner.dax.Profile
Value of the profile
mVersion - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
 
mVersion - Variable in class edu.isi.pegasus.planner.dax.Executable
Version of the executable
mVersion - Variable in class edu.isi.pegasus.planner.dax.File
The logical version of the file.
mVersion - Variable in class edu.isi.pegasus.planner.dax.Transformation
Version of the transformation
mVersionPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
 
mWhat - Variable in class edu.isi.pegasus.planner.dax.Invoke
What to invoke
mWhen - Variable in class edu.isi.pegasus.planner.dax.Invoke
WHen to Invoke
mWriter - Variable in class edu.isi.pegasus.planner.dax.ADAG
Handle the XML writer

P

Patterns - Class in edu.isi.pegasus.planner.dax
 
Patterns() - Constructor for class edu.isi.pegasus.planner.dax.Patterns
 
PFN - Class in edu.isi.pegasus.planner.dax
 
PFN(String) - Constructor for class edu.isi.pegasus.planner.dax.PFN
 
PFN(String, String) - Constructor for class edu.isi.pegasus.planner.dax.PFN
 
Pipeline - Class in edu.isi.pegasus.planner.dax.examples
 
Pipeline() - Constructor for class edu.isi.pegasus.planner.dax.examples.Pipeline
 
Profile - Class in edu.isi.pegasus.planner.dax
Profile Object for the DAX API
Profile(String, String) - Constructor for class edu.isi.pegasus.planner.dax.Profile
Create a new Profile object
Profile(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Profile
Create a new Profile object
Profile(Profile.NAMESPACE, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Profile
 
Profile(Profile) - Constructor for class edu.isi.pegasus.planner.dax.Profile
Copy constructor
Profile.NAMESPACE - Enum in edu.isi.pegasus.planner.dax
Supported NAMESPACES.
Profile.NAMESPACE() - Constructor for enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
 

S

SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.dax.ADAG
The "not-so-official" location URL of the DAX schema definition.
SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.dax.ADAG
The "official" namespace URI of the site catalog schema.
SCHEMA_NAMESPACE_XSI - Static variable in class edu.isi.pegasus.planner.dax.ADAG
XSI SCHEMA NAMESPACE
SCHEMA_VERSION - Static variable in class edu.isi.pegasus.planner.dax.ADAG
The version to report.
setArchitecture(Executable.ARCH) - Method in class edu.isi.pegasus.planner.dax.Executable
Set the architecture the executable is compiled for
setChild(String) - Method in class edu.isi.pegasus.planner.dax.Edge
 
setExecutable(boolean) - Method in class edu.isi.pegasus.planner.dax.File
Mark the file as executable.
setExecutable() - Method in class edu.isi.pegasus.planner.dax.File
Mark the file as executable.
setGlibc(String) - Method in class edu.isi.pegasus.planner.dax.Executable
Set the glibc this executable is compiled for
setInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
set the installed flag on the executable.
setInstalled(boolean) - Method in class edu.isi.pegasus.planner.dax.Executable
Set the installed flag on the executable.
setLabel(String) - Method in class edu.isi.pegasus.planner.dax.Edge
 
setLink(File.LINK) - Method in class edu.isi.pegasus.planner.dax.File
Set the file linkage
setNodeLabel(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setOptional(boolean) - Method in class edu.isi.pegasus.planner.dax.File
Set the optional flag on the file.
setOS(Executable.OS) - Method in class edu.isi.pegasus.planner.dax.Executable
Set the OS the executable is compiled for
setOSRelease(String) - Method in class edu.isi.pegasus.planner.dax.Executable
Set the osrelease the executable is compiled for
setOSVersion(String) - Method in class edu.isi.pegasus.planner.dax.Executable
Set the osversion the executable is compiled for
setParent(String) - Method in class edu.isi.pegasus.planner.dax.Edge
 
setRegister(boolean) - Method in class edu.isi.pegasus.planner.dax.File
Set the register flag of the file.
setSite(String) - Method in class edu.isi.pegasus.planner.dax.PFN
 
setSize(String) - Method in class edu.isi.pegasus.planner.dax.File
Set the size of the file.
setStderr(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStderr(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdin(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setStdout(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
setTransfer(File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.File
Set the transfer type of the file
setValue(String) - Method in class edu.isi.pegasus.planner.dax.MetaData
Set the value of the metadata
setValue(String) - Method in class edu.isi.pegasus.planner.dax.Profile
Set the value of this Profile
setWhat(String) - Method in class edu.isi.pegasus.planner.dax.Invoke
Set what executable to invoke and how
setWhen(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.dax.Invoke
Set when to invoke

T

toString() - Method in class edu.isi.pegasus.planner.dax.Edge
 
toString() - Method in class edu.isi.pegasus.planner.dax.Executable
 
toString() - Method in class edu.isi.pegasus.planner.dax.Invoke
Returns the object as String
toString() - Method in class edu.isi.pegasus.planner.dax.Transformation
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.ADAG
Generates a DAX representation.
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Write the XML representation of this object
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.CatalogType
Write the XML representation of this object
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.DAG
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.DAX
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Edge
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Edge
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Executable
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Executable
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.File
Write the file object
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.File
Write the file object, with indent level N
toXML(XMLWriter, int, String) - Method in class edu.isi.pegasus.planner.dax.File
Write the file object as XML but render it as the elementname
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Invoke
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Invoke
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Job
Overrides Base TOXML method.
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.MetaData
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.MetaData
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.PFN
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.PFN
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Profile
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Profile
 
toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Transformation
 
toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Transformation
 
toXMLParent(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Edge
 
toXMLParent(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Edge
 
Transformation - Class in edu.isi.pegasus.planner.dax
This Object is used to create a complex Transformation.
Transformation(String) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
Create a new Transformation object
Transformation(Transformation) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
Copy Constructor
Transformation(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
Create a new Transformation Object

U

unsetInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
Unset the installed flag on the executable.
uses(String, File.LINK) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER, boolean, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(String, File.LINK, File.TRANSFER, boolean, boolean, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER, boolean, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(File, File.LINK, File.TRANSFER, boolean, boolean, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(List<File>, File.LINK) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
 
uses(CatalogType) - Method in class edu.isi.pegasus.planner.dax.Transformation
Set the file or executable being used by the transformation
uses(List<CatalogType>) - Method in class edu.isi.pegasus.planner.dax.Transformation
Set the List of files and/or executables being used by the transformation

V

valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Executable.ARCH
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Executable.OS
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.File.LINK
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.File.TRANSFER
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Invoke.WHEN
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
Returns the enum constant of this type with the specified name.
values() - Static method in enum edu.isi.pegasus.planner.dax.Executable.ARCH
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.isi.pegasus.planner.dax.Executable.OS
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.isi.pegasus.planner.dax.File.LINK
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.isi.pegasus.planner.dax.File.TRANSFER
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.isi.pegasus.planner.dax.Invoke.WHEN
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
Returns an array containing the constants of this enum type, in the order they are declared.

W

writeToFile(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
Generate a DAX File out of this object;
writeToSTDOUT() - Method in class edu.isi.pegasus.planner.dax.ADAG
Generate a DAX representation on STDOUT.
writeToWriter(Writer, boolean) - Method in class edu.isi.pegasus.planner.dax.ADAG
Generate a DAX representation and pipe it into the Writer
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